Department Seminars & Colloquia
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B305 Seminar room, IBS
Math Biology
Hang Joon Kim (University of Cincinnati)
Bayesian model calibration and sensitivity analysis for oscillating biochemical experiments
B305 Seminar room, IBS
Math Biology
Most organisms exhibit various endogenous oscillating behaviors, which provides crucial information about how the internal biochemical processes are connected and regulated. Along with physical experiments, studying such periodicity of organisms often utilizes computer experiments relying on ordinary differential equations (ODE) because configuring the internal processes is difficult. Simultaneously utilizing both experiments, however, poses a significant statistical challenge due to its ill behavior in high dimension, identifiability, and numerical instability. This article devises a new Bayesian calibration strategy for oscillating biochemical models. The proposed methodology can efficiently estimate the computer experiments’ (ODE) parameters that match the physical experiments. The proposed framework is illustrated with circadian oscillations observed in a model filamentous fungus, Neurospora crassa.
In this talk, we will introduce some applications of currents. Thanks to results of Demailly--Paun or Collins--Tosatti, we have a decent understanding of how (cohomology class of) currents are found to be nef and big, the positivity notions that succeed Kahler-ness. With the K3 surface example, where its intersection theory is well-known, we then sketch on how all these machinery are applied to give some result (of Filip--Tosatti) on dynamical rigidity on K3 surfaces.
Zoom 회의 참가 https://zoom.us/j/92837213232?pwd=Y1RTODFITGFHQWNRbTRTeTlNakZsQT09 회의 ID: 928 3721 3232 암호: barH1Y
Zoom 회의 참가 https://zoom.us/j/92837213232?pwd=Y1RTODFITGFHQWNRbTRTeTlNakZsQT09 회의 ID: 928 3721 3232 암호: barH1Y
In this talk, we will introduce the notion of currents, a generalization of differential forms, allowing distributions (dual of smooth compactly supported functions) as coefficients. With this, we introduce their examples, derivatives, cohomology, "de Rham" type groups, and how they interplay with divisors of complex varieties.
Zoom 회의 참가 https://zoom.us/j/92837213232?pwd=Y1RTODFITGFHQWNRbTRTeTlNakZsQT09 회의 ID: 928 3721 3232 암호: barH1Y
Zoom 회의 참가 https://zoom.us/j/92837213232?pwd=Y1RTODFITGFHQWNRbTRTeTlNakZsQT09 회의 ID: 928 3721 3232 암호: barH1Y
The studies on the fibers of the Hitchin map are equivalent to those on spectral data for Higgs bundles. In this talk, I will introduce spectral data for SL(2, C)- Higgs bundles over a smooth curve and then discuss how to describe spectral data for SL(2, C)-Higgs bundles over an irreducible nodal curve.
Zoom ID: 352 730 6970, PW: 9999.
Zoom ID: 352 730 6970, PW: 9999.
MUltiple SIgnal Classification (MUSIC) is a well-known, non-iterative imaging technique in inverse scattering problem. Throughout various researches, it has been confirmed that MUSIC is very fast, effective, and stable. Due to this reason MUSIC has been applied to various inverse scattering problems however, it has not yet been designed and used to identify unknown anomalies from measured scattering parameters (S-parameters) in microwave imaging. In this presentation, we apply MUSIC in microwave imaging for a fast identification of arbitrary shaped anomalies from real-data and establish a mathematical theory for illustrating the feasibilities and limitations of MUSIC. Simulations results with real-data are shown for supporting established theoretical results.
Meeting ID: 873 9069 4743
Passcode: 728543
Gromov-Witten invariants are some rational numbers roughly counting curves inside a Calabi-Yau manifold. These numbers have some recurvsive structure on the genus of the curve. I will explain how to study this recursive structure throughholomorphic anomaly equation.
For a semi-simple Gromov-Witten theory, I will explain the method of proof of holomorphic anomaly equation for several examples using Givental-Teleman's classification thoerem.If I have more time, I will discuss how to generalize this method to a non-semi simple Gromov-Witten theory.
Zoom ID: 352 730 6970, Password: 9999
Zoom ID: 352 730 6970, Password: 9999
Abstract: The biological master clock, the suprachiasmatic nucleus (SCN) of a mouse, contains many (~20,000) clock cells heterogeneous, particularly with respect to their circadian period. Despite the inhomogeneity, within an intact SCN, they maintain a very high degree of circadian phase coherence, which is generally rendered visible as system-wide propagating phase waves. The phase coherence is vital for mammals sustaining various circadian rhythmic activities. It is supposedly achieved not by one but a few different cell-to-cell coupling mechanisms: Among others, action potential (AP)-mediated connectivity is known to be essential. However, due to technical difficulties and limitations in experiments, so far, very little information is available about the (connectome) morphology of the AP-mediated SCN neural connectivity. With that limited amount of information, here we exhaustively and systematically explore a large (~25,000) pool of various model network morphologies to come up with the most realistic case for the SCN. All model networks within this pool reflect an actual indegree distribution as well as a physical range distribution of afferent clock cells, which were acquired in earlier optogenetic connectome experiments. Subsequently, our network selection scheme is based on a collection of multitude criteria, testing the properties of SCN circadian phase waves in perturbed (or driven) as well as in their natural states: Key properties include, 1) degree of phase synchrony (or dispersal) and direction of wave propagation, 2) entrainability of the model oscillator networks to an external circadian forcing (mimicking the light modulation subject to the geophysical circadian rhythm), and 3) emergence of “phase-singularities” following a global perturbation and their decay. The selected network morphologies require several common features that 1) the indegree – outdegree relation must have a positive correlation; 2) the cells in the SCN core region have a larger total (in+out) degree than that of the shell region; 3) core to shell (or shell to core) connections should be much less than core to core (and shell to shell) connections. Taken all together, our comprehensive test results strongly suggest that degree distribution over the whole SCN is not uniform but position-dependent and raise a question of whether this inhomogeneous degree distribution is related to the distribution of known subpopulations of SCN cells.
Zoom Meeting(857 8963 8008)
Applied mathematics
Kiwoon Kwon (Dongguk University)
Skin cancer detection and deep learning: Back to features?
Zoom Meeting(857 8963 8008)
Applied mathematics
피부암은 미국에서 가장 흔한 암 중의 하나이며 국내에서도 고령화, 오존층 변화와 자외선 노출 빈도의 증가에 따른 발병 율이 증가 하고 있다. 피부암 중의 약 2.1%인 전이 율이 높아 치료하기가 쉽지 않은 악성 흑색종(Malignant melanoma)이며 이와 달리 양성 흑색종 (NMSK: Nonmelanoma Skin Cancer)은 암으로 분류되긴 하지만, 피부 내에서만 자라고, 전이 율이 적어 초기에 발견하여 암 부위만 제거하면 10년 이상 생존율이 89%이상인 양성 암이다. 따라서, 초기에 아주 작은 수지만 위험한 악성 흑색종과 많은 수의 크게 위험하지 않은 양성 흑색종을 구분하여 적절히 치료하는 것은 피부암 치료에서 아주 중요한 부분이라고 할 수 있다. 흑색종 진단에 많이 사용되어져 왔던 전통적인 특징점(Feature)들로는 ABCD criteria(그림 1)과 같이 의심영역의 비대칭성(A: Asymmetry), 경계의 불규칙성(B:Border irregularity), 색조의 다양성(C: Color variegation) 등이 있다. 피부암 진단에 대한 연구는 많은 진전이 있었고, 2018년의 International Skin Imaging Collaboration (ISIC) 는 피부암 판별 경진대회를 열어서 사실상 이 분야의 벤치마크가 되었다. 다양한 영상 분류 알고리즘과 기법이 시도되었고 특히 CNN을 이용한 진단 결과들은 피부과 전문의 진단결과와 비슷하거나 더 좋은 결과를 내기도 했다. CNN의 이런 좋은 성과에도 불구하고 의학영역은 환자의 목숨을 다루기 때문에 높은 정확도와 함께 고려해야 할 것은 설명 가능한 심층학습의 필요성이다. 예를 들어, 만약 의학적 사고가 발생하였을 때 의료 행위에 대한 과실 책임에 대한 문제가 대두 되고 있다. 즉 의료사고에 대한 책임을 누가 질 것인가?, 의료 사고의 발생 원인이 무엇이며 어떻게 설명할 수 있는가?, 만약 결과가 좋다면 어떻게 이 방법을 발전시킬 수 있을 것인가? 의 문제들이다. 이를 위해 Grad-CAM 기법, Image Occulsion 기법, LIME (Local interpretable model-agnostic explanations)기법 등이 사용되고 있다. 이런 기법들을 이용하여 잘 알려진 진단 결과가 우수한 심층학습을 대상으로 어떤 특징 점들이 진단 결과의 우수성에 영향을 미치는 지 조사하려고 한다. 이 기법을 통해 전통적으로 알려진 특징 점인 A(비대칭성), B(경계 불규칙성), C(색조 다양성), D(크기) 와 설명 가능한 심층학습 기법으로 새로운 특징 점을 발견할 수 있을지 알아보고자 한다.
Meeting ID: 857 8963 8008 Passcode: 932161
We define a localised Euler class for isotropic sections, and isotropic cones, in SO(N) bundles. We use this to give an algebraic definition of Borisov-Joyce sheaf counting invariants on Calabi-Yau 4-folds. When a torus acts, we prove a localisation result. This talk is based on the joint work with Richard P. Thomas.
Zoom ID: 352-730-6970, PW:9999 The above times are in Korean Standard Time. This is the same time as 9AM of June 18, 2021 (Friday) in the UK (GMT+1)
Zoom ID: 352-730-6970, PW:9999 The above times are in Korean Standard Time. This is the same time as 9AM of June 18, 2021 (Friday) in the UK (GMT+1)
Bayesian statistical approaches have been developed for various applications due to their flexibility. I will cover different application areas of Bayesian methods including applications to analyses of complex count data, decision making problems, and analyses of survival times data. For part I, I will discuss two recently completed projects and comment on some on-going and future projects. Part II will cover a gentle introduction to survival analyses focusing on Bayesian approaches and discuss its extensions for joint analysis with recurrent events data or longitudinal data. For part III, I will cover a general Bayesian decision making framework and their applications to clinical trial design and data analysis.
Zoom ID : 901 228 2472 (Password : 123456)
Zoom ID : 901 228 2472 (Password : 123456)
Introduction: In this lecture series, we'll discuss algebro-geometric study on fundamental problems concerning tensors via higher secant varieties. We start by recalling definition of tensors, basic properties and small examples and proceed to discussion on tensor rank, decomposition, and X-rank for any nondegenerate variety $X$ in a projective space. Higher secant varieties of Segre (resp. Veronese) embeddings will be regarded as a natural parameter space of general (resp. symmetric) tensors in the lectures. We also review known results on dimensions of secants of Segre and Veronese, and consider various techniques to provide equations on the secants.In the end, we'll finish the lectures by introducing some open problems related to the theme such as syzygy structures and singularities of higher secant varieties.
It is known that the stochastic Potts model exhibits exponentially slow mixing at the low temperature regime. In this talk, we explain precise quantitative results regarding this slow mixing behavior of the Potts model at large lattices. This talk is based on the joint work with Seonwoo Kim.
Introduction: In this lecture series, we'll discuss algebro-geometric study on fundamental problems concerning tensors via higher secant varieties. We start by recalling definition of tensors, basic properties and small examples and proceed to discussion on tensor rank, decomposition, and X-rank for any nondegenerate variety $X$ in a projective space. Higher secant varieties of Segre (resp. Veronese) embeddings will be regarded as a natural parameter space of general (resp. symmetric) tensors in the lectures. We also review known results on dimensions of secants of Segre and Veronese, and consider various techniques to provide equations on the secants.In the end, we'll finish the lectures by introducing some open problems related to the theme such as syzygy structures and singularities of higher secant varieties.
Bayesian statistical approaches have been developed for various applications due to their flexibility. I will cover different application areas of Bayesian methods including applications to analyses of complex count data, decision making problems, and analyses of survival times data. For part I, I will discuss two recently completed projects and comment on some on-going and future projects. Part II will cover a gentle introduction to survival analyses focusing on Bayesian approaches and discuss its extensions for joint analysis with recurrent events data or longitudinal data. For part III, I will cover a general Bayesian decision making framework and their applications to clinical trial design and data analysis.
Zoom ID : 901 228 2472 (Password : 123456)
Zoom ID : 901 228 2472 (Password : 123456)
Introduction: In this lecture series, we'll discuss algebro-geometric study on fundamental problems concerning tensors via higher secant varieties. We start by recalling definition of tensors, basic properties and small examples and proceed to discussion on tensor rank, decomposition, and X-rank for any nondegenerate variety $X$ in a projective space. Higher secant varieties of Segre (resp. Veronese) embeddings will be regarded as a natural parameter space of general (resp. symmetric) tensors in the lectures. We also review known results on dimensions of secants of Segre and Veronese, and consider various techniques to provide equations on the secants.In the end, we'll finish the lectures by introducing some open problems related to the theme such as syzygy structures and singularities of higher secant varieties.
Bayesian statistical approaches have been developed for various applications due to their flexibility. I will cover different application areas of Bayesian methods including applications to analyses of complex count data, decision making problems, and analyses of survival times data. For part I, I will discuss two recently completed projects and comment on some on-going and future projects. Part II will cover a gentle introduction to survival analyses focusing on Bayesian approaches and discuss its extensions for joint analysis with recurrent events data or longitudinal data. For part III, I will cover a general Bayesian decision making framework and their applications to clinical trial design and data analysis.
Zoom ID : 901 228 2472 (Password : 123456)
Zoom ID : 901 228 2472 (Password : 123456)
Online(Zoom)
Discrete Math
O-joung Kwon (Incheon National University & IBS Discrete Mathema)
Classes of intersection digraphs with good algorithmic properties
Online(Zoom)
Discrete Math
An intersection digraph is a digraph where every vertex $v$ is represented by an ordered pair $(S_v, T_v)$ of sets such that there is an edge from $v$ to $w$ if and only if $S_v$ and $T_w$ intersect. An intersection digraph is reflexive if $S_v\cap T_v\neq \emptyset$ for every vertex $v$. Compared to well-known undirected intersection graphs like interval graphs and permutation graphs, not many algorithmic applications on intersection digraphs have been developed.
Motivated by the successful story on algorithmic applications of intersection graphs using a graph width parameter called mim-width, we introduce its directed analogue called `bi-mim-width’ and prove that various classes of reflexive intersection digraphs have bounded bi-mim-width. In particular, we show that as a natural extension of $H$-graphs, reflexive $H$-digraphs have linear bi-mim-width at most $12|E(H)|$, which extends a bound on the linear mim-width of $H$-graphs [On the Tractability of Optimization Proble
Zoom ID: 934 3222 0374 (ibsdimag)
Zoom ID: 934 3222 0374 (ibsdimag)
MUltiple SIgnal Classification (MUSIC) is a well-known, non-iterative imaging technique in inverse scattering problem. Throughout various researches, it has been confirmed that MUSIC is very fast, effective, and stable. Due to this reason MUSIC has been applied to various inverse scattering problems however, it has not yet been designed and used to identify unknown anomalies from measured scattering parameters (S-parameters) in microwave imaging. In this presentation, we apply MUSIC in microwave imaging for a fast identification of arbitrary shaped anomalies from real-data and establish a mathematical theory for illustrating the feasibilities and limitations of MUSIC. Simulations results with real-data are shown for supporting established theoretical results.
갑작스러운 연사 사정으로 세미나 일정이 취소되었습니다. 양해 부탁드립니다.
갑작스러운 연사 사정으로 세미나 일정이 취소되었습니다. 양해 부탁드립니다.
I will discuss various near-rationality concepts for smooth projective varieties. I will introduce the standard norm variety associated with a symbol in mod-l Milnor K-theory. The standard norm varieties played an important role in Vovedsky's proof of the Bloch-Kato conjecture. I will then describe known near-rationality results for standard norm varieties and outline an argument showing that a standard norm variety is universally R-trivial over an algebraically closed field of characteristic 0. The talk is based on joint work with Chetan Balwe and Amit Hogadi.
Zoom ID: 352 730 6970, Password : 9999. All times are local in KST.
Zoom ID: 352 730 6970, Password : 9999. All times are local in KST.
Diophantine approximation is a branch of number theory where one studies approximation of irrational numbers by rationals and quality of such approximations. In this talk, we will consider intrinsic Diophantine approximation, which deals with approximating irrational points in a closed subset $X$ in $\mathbb{R}^n$ via rational points lying in $X$. First, we consider $X = S^1$, the unit circle in $\mathbb{R}^2$ centered at the origin. We give a complete description of an initial discrete part of the Lagrange spectrum of $S^1$ in the sense of intrinsic Diophantine approximation. This is an analogue of the classical result of Markoff in 1879, where he characterized the most badly approximable real numbers via the periods of their continued fraction expansions. Additionally, we present similar results for approximations of $S^1$ by a few different sets of rational points. This is joint work with Dong Han Kim (Dongguk University, Seoul). (Contact Bo-Hae Im if you plan to join the seminar.)
A knot is a smooth embedding of an oriented circle into the three-sphere, and two knots are concordant if they cobound a smoothly embedded annulus in the three-sphere times the interval. Concordance gives an equivalence relation, and the set of equivalence classes forms a group called the concordance group. This group was introduced by Fox and Milnor in the 60's and has played an important role in the development of low-dimensional topology. In this talk, I will present some known results on the structure of the group. Also, I will talk about a knot that has infinite order in the concordance group, though it bounds a smoothly embedded disk in a rational homology ball. This is joint work with Jennifer Hom, Sungkyung Kang, and Matthew Stoffregen.
Room B232, IBS (기초과학연구원)
Discrete Math
Doowon Koh (Department of Mathematics, Chungbuk National Unive)
Mattila-Sjölin type functions: A finite field model
Room B232, IBS (기초과학연구원)
Discrete Math
Let $\mathbb{F}_q$ be a finite field of order $q$ which is a prime power. In the finite field setting, we say that a function $\phi\colon \mathbb{F}_q^d\times \mathbb{F}_q^d\to \mathbb{F}_q$ is a Mattila-Sjölin type function in $\mathbb{F}_q^d$ if for any $E\subset \mathbb{F}_q^d$ with $|E|\gg q^{\frac{d}{2}}$, we have $\phi(E, E)=\mathbb{F}_q$. The main purpose of this talk is to present the existence of such a function. More precisely, we will construct a concrete function $\phi: \mathbb{F}_q^4\times \mathbb{F}_q^4\to \mathbb{F}_q$ with $q\equiv 3 \mod{4}$ such that if $E\subset \mathbb F_q^4$ with $|E|>q^2,$ then $\phi(E,E)=\mathbb F_q$. This is a joint work with Daewoong Cheong, Thang Pham, and Chun-Yen Shen.