Department Seminars & Colloquia
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A knot is a smooth embedding of an oriented circle into the three-sphere, and two knots are concordant if they cobound a smoothly embedded annulus in the three-sphere times the interval. Concordance gives an equivalence relation, and the set of equivalence classes forms a group called the concordance group. This group was introduced by Fox and Milnor in the 60's and has played an important role in the development of low-dimensional topology. In this talk, I will present some known results on the structure of the group. Also, I will talk about a knot that has infinite order in the concordance group, though it bounds a smoothly embedded disk in a rational homology ball. This is joint work with Jennifer Hom, Sungkyung Kang, and Matthew Stoffregen.
The rapid development of high-throughput sequencing technology in recent years is providing unprecedented opportunities to profile microbial communities from a variety of environments, but analysis of such multivariate taxon count data remains challenging. I present two flexible Bayesian methods to analyze complex count data with application to microbiome study. The first project is to develop a Bayesian sparse multivariate regression method that model the relationship between microbe abundance and environmental factors. We extend conventional nonlocal priors, and construct asymmetric non-local priors for regression coefficients to efficiently identify relevant covariates and their effect directions. The developed Bayesian sparse regression model is applied to analyze an ocean microbiome dataset collected over time to study the association of harmful algal bloom conditions with microbial communities. For the second project, we develop a Bayesian nonparametric regression model for count data with excess zeros. The approach provides straightforward community-level insights into how characteristics of microbial communities such as taxa richness and diversity are related to covariates. The baseline counts of taxa in samples are carefully constructed to obtain improved estimates of differential abundance. We apply the model to a chronic wound microbiome dataset, comparing the microbial communities present in chronic wounds versus in healthy skin.
Co-authors; Kurtis Shuler (Sandia National Lab), Marilou Sison-Mangus (Ocean Sciences, UCSC), Irene A. Chen (Chemistry and Biochemistry, UCLA), Samuel Verbanic (Chemistry and Biochemistry, UCLA)
Co-authors; Kurtis Shuler (Sandia National Lab), Marilou Sison-Mangus (Ocean Sciences, UCSC), Irene A. Chen (Chemistry and Biochemistry, UCLA), Samuel Verbanic (Chemistry and Biochemistry, UCLA)
A notion of sublinear expander has played a central role in the resolutions of a couple of long-standing conjectures in embedding problems in graph theory, including e.g. the odd cycle problem of Erdos and Hajnal that the harmonic sum of odd cycle length in a graph diverges with its chromatic number. I will survey some of these developments.