1. Jo H, Hong H, Hwang H,J, Chang W, Kim JK, Density Physics-Informed Neural Network identifies sources of cell heterogeneity in signal transduction under antibiotic stress, Cell Patterns (2023)

2. Hyeontae Jo†, Hong Jun Jeon, Junseok Ahn, Saebom Jeon*, Jae Kyoung Kim*, Seockhoon Chung*, Dysfunctional Beliefs and Attitude about Sleep-6 (DBAS-6): Data-driven Shortened Version from A Machine Learning Approach (Submitted)

3. Hyeontae Jo†, Myna Lim†, Hong Jun Jeon, Junseok Ahn, Saebom Jeon, Jae Kyoung Kim*, Seockhoon Chung*, Data-driven Shortened Insomnia Severity Index: A Machine Learning Approach (Submitted)

1. Li P, Kim JK, Circadian regulation of sinoatrial nodal cell pacemaking function: dissecting the roles of autonomic control, body temperature, and local circadian rhythmicity, PLoS Computational Biology (2024)

1. Yuta Otobe†, Eui Min Jeong†, Shunsuke Ito†, Yuta Shinohara, Nobuhiro Kurabayashi, Atsu Aiba, Yoshitaka Fukada*, Jae Kyoung Kim*, Hikari Yoshitane*, Phosphorylation of DNA-binding domains of CLOCK-BMAL1 is essential for PER-dependent inhibition in circadian clock of mammalian cells, PNAS (2024)

2. Eui Min Jeong, Jae Kyoung Kim, A robust ultrasensitive transcriptional switch in noisy cellular environments, npj syst. biol. appl. (2024)

3. Eui Min Jeong, Yun Min Song, Jae Kyoung Kim, Combined multiple transcriptional repression mechanisms generate ultrasensitivity and oscillations, Interface focus (2022)

4. Eui Min Jeong†, Miri Kwon†, Eunjoo Cho†, Sang Hyuk Lee, Hyun Kim, Eun Young Kim*, Jae Kyoung Kim*, Systematic modeling-driven experiments identify distinct molecular clockworks underlying hierarchically organized pacemaker neurons, PNAS (2022)

1. Kim, H., Chang, W., Chae, S.J. et al. scLENS: data-driven signal detection for unbiased scRNA-seq data analysis, Nat Commun (2024)

2. Eui Min Jeong†, Miri Kwon†, Eunjoo Cho†, Sang Hyuk Lee, Hyun Kim, Eun Young Kim*, Jae Kyoung Kim*, Systematic modeling-driven experiments identify distinct molecular clockworks underlying hierarchically organized pacemaker neurons, PNAS (2022)

1. Lee S†, Chae SJ†, Jang IH, Oh S, Kim SM, Lee SY, Kim JH, Ko J, Kim HJ, Kim JK, B7H6 is the Predominant Activating Ligand Driving Natural Killer Cell-Mediated Killing in Liquid Tumor Patients: Evidence from Clinical, In Silico, In Vitro, and In Vivo Studies, (Submitted) (2024)

2. Shin S†, Chae SJ†, Lee S, Kim JK, Universally valid reduction of multiscale stochastic biochemical systems using simple non-elementary propensities, PLoS Computational Biology (2024)

3. Kim H, Chang W, Chae SJ, Park JE, Seo M, Kim JK, scLENS: data-driven signal detection for unbiased scRNA-seq data analysis, Nature Communications (2024)

4. Chae SJ, Kim DW, Igoshin OA, Lee S, Kim JK, Beyond microtubules: The cellular environment at the endoplasmic reticulum attracts proteins to the nucleus, enabling nuclear transport, iScience (2024)

5. Chae SJ, Kim DW, Lee S, Kim JK, Spatially coordinated collective phosphorylation filters spatiotemporal noises for precise circadian timekeeping, iScience (2023)

1. Song YM, Hong H, Kim JK, Universally valid reduction of multiscale stochastic biochemical systems using simple non-elementary propensities, PLoS Comp Biol (2021)

2. Jeong EM, Song YM, Kim JK, Combined multiple transcriptional repression mechanisms generate ultrasensitivity and oscillations, Interface Focus (2022)

3. Vu NT, Song YM, Tran QT, Yun H, Kim SK, Chae J, Kim JK, Beyond the Michaelis-Menten: Accurate Prediction of Drug Interactions through Cytochrome P450 3A4 Induction, Clinical Pharmacology & Therapeutics (2023)

4. Song YM, Choi SJ, Park SH, Lee SJ, Joo EY, Kim JK, A real-time, personalized sleep intervention using mathematical modelling and wearable devices, Sleep (2023)

5. Lee MP, Hoang K, Park S, Song YM, Joo EY, Chang W, Kim JH, Kim JK, Imputing Missing Sleep Data from Wearables with Neural Networks in Real-World Settings, Sleep (2023)

6. Song YM, Campbell S, Shiau L, Kim JK, Ott W, Noisy delay denoises biochemical oscillators, Physical Review Letters (2024)

7. Song YM, Jeong J, de los Reyes AV, Lim D, Cho C-H, Yeom JW, Lee T, Lee J-B, Lee H-J, Kim JK, Causal Dynamics of Sleep, Circadian Rhythm, and Mood in Major Depression and Bipolar Disorder Patients: Insights from Longitudinal Wearable Device Data, eBiomedicine (2024)

8. Lim D, Jeong J, Song YM, Lee H-J, Kim JK, Highly Accurate Prediction of Mood Episodes in Mood Disorder Patients Using Sleep and Circadian Rhythm Features from Wearables (Submitted)

9. Song YM, Jeon S, Cho A, Chung S, Ahn Y, Kim JK, Suh S, Predictors of Sleep Quality Trajectories and Alertness in Shift Workers Undergoing Cognitive-Behavioral Therapy for insomnia (Submitted)

1. Yun Min Song†, Jaegwon Jeong†, Aurelio V de los Reyes†, Dongju Lim, Chul-Hyun Cho, Ji Won Yeom, Taek Lee, Jung-Been Lee, Heon-Jeong Lee*, and Jae Kyoung Kim*, Causal Dynamics of Sleep, Circadian Rhythm, and Mood in Major Depression and Bipolar Disorder Patients: Insights from Longitudinal Wearable Device Data, eBioMedicine (2024)

2. Dongju Lim†, Jaegwon Jeong†, Yun Min Song, Chul-Hyun Cho, Ji Won Yeom, Taek Lee, Jung-Been Lee, Heon-Jeong Lee*, Jae Kyoung Kim*, Highly Accurate Prediction of Mood Episodes in Mood Disorder Patients Using Sleep and Circadian Rhythm Features from Wearables (Submitted)

3. Gyeong-Im Shin†, Joon-Yung Cha†, Dongju Lim, Aliya Alimzhan, Gyeongik Ahn, Song Yi Jeong, Myung Geun Ji, Sang Yeol Lee, Min Gab Kim, Jeongsik Kim, Jae Kyoung Kim, Woe-Yeon Kim*, GIGANTEA gates TOR-mediated meristem activation to control plant diurnal root growth (In preparation)

1. Olive R. Cawiding†, Saebom Jeon, Donnabel Tubera-Panes, Aurelio A. de los Reyes V, Jae Kyoung Kim*, Disentangling climate’s dual role in dengue dynamics: a multi-region causal analysis study (Submitted)