Wednesday, April 7, 2021

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2021-04-09 / 12:00 ~ 13:00
학과 세미나/콜로퀴엄 - 수리생물학: Highly accurate fluorogenic DNA sequencing with information theory–based error correction 인쇄
by 홍혁표(KAIST)
We will discuss about “Highly accurate fluorogenic DNA sequencing with information theory–based error correction”, Chen et al., Nature Biotechnology (2017) Eliminating errors in next-generation DNA sequencing has proved challenging. Here we present error-correction code (ECC) sequencing, a method to greatly improve sequencing accuracy by combining fluorogenic sequencing-by-synthesis (SBS) with an information theory–based error-correction algorithm. ECC embeds redundancy in sequencing reads by creating three orthogonal degenerate sequences, generated by alternate dual-base reactions. This is similar to encoding and decoding strategies that have proved effective in detecting and correcting errors in information communication and storage. We show that, when combined with a fluorogenic SBS chemistry with raw accuracy of 98.1%, ECC sequencing provides single-end, error-free sequences up to 200 bp. ECC approaches should enable accurate identification of extremely rare genomic variations in various applications in biology and medicine.
2021-04-14 / 17:00 ~ 18:00
학과 세미나/콜로퀴엄 - Discrete Math: Ramsey properties of semilinear graphs 인쇄
by István Tomon(Department of Mathematics, ETH Zurich)

2021-04-13 / 16:30 ~ 17:30
학과 세미나/콜로퀴엄 - Discrete Math: Some Ordered Ramsey Numbers of Graphs on Four Vertices 인쇄
by William Overman(University of California, Irvine and IBS Discrete )
Ordered Ramsey numbers were introduced in 2014 by Conlon, Fox, Lee, and Sudakov. Their results included upper bounds for general graphs and lower bounds showing separation from classical Ramsey numbers. We show the first nontrivial results for ordered Ramsey numbers of specific small graphs. In particular we prove upper bounds for orderings of graphs on four vertices, and determine some numbers exactly using SAT solvers for lower bounds. These results are in the spirit of exact calculations for classical Ramsey numbers and use only elementary combinatorial arguments. This is joint work with Jeremy Alm, Kayla Coffey, and Carolyn Langhoff.
2021-04-07 / 12:00 ~ 13:00
학과 세미나/콜로퀴엄 - 기타: (첫수융합포럼) 곡면 상의 위상적 동역학계와 그 응용 인쇄
by 백형렬(KAIST 수리과학과)
Thurston classified mappings from a given surface to itself. By iterating the surface mappings, one can view this as a dynamical system. Most of those surface mappings are so-called pseudo-Anosov. We briefly explain how we should understand these pseudo-Anosov maps and their physical meaning.
2021-04-07 / 12:00 ~ 13:00
학과 세미나/콜로퀴엄 - 기타: (첫수융합포럼) 액정물질 기반 위상학적 결함구조의 상전이 인쇄
by 윤동기(KAIST 화학과)
Topological defect structure is one of the most interesting topics in natural sciences. Especially, the topological defect transition was highlighted by Nobel prize in 2016. But this topic is hard to understand and realize in the practical condition because the size and time-scale are huge in cosmos or so tiny in skyrmion system. So, we proposed to use liquid crystal (LC) materials to directly show this interesting topic, phase transition of topological defect.
2021-04-09 / 16:00 ~ 17:00
학과 세미나/콜로퀴엄 - 대수기하학: Introduction to infinity-categories III 인쇄
by 조창연(QSMS Seoul National University)
This is the part 3 of the lectures on infinity-categories: This talk will be focused on introducing quasi-categories as our model for infinity-categories. After reviewing some background material needed to define quasi-categories, we'll see how the definition works.
2021-04-09 / 10:00 ~ 12:00
학과 세미나/콜로퀴엄 - SAARC 세미나: 인쇄
by ()
At Data Science Group, we try to offer computational models for challenging real-world problems. This talk will introduce two such problems that can benefit from collaboration with mathematicians and theorists. One is customs fraud detection, where the goal is to determine a small set of fraudulent transactions that will maximize the tax revenue when caught. We had previously shown a state-of-the-art deep learning model in collaboration with the World Customs Organization [KDD2020]. The next challenge is to consider semi-supervised (i.e., using very few labels) and unsupervised (i.e., no label information) settings that better suit developing countries' conditions. Another research problem is poverty mapping, where the goal is to infer economic index from high-dimensional visual features learned from satellite images. Several innovative algorithms have been proposed for this task [Science2016, AAAI2020, KDD2020]. I will introduce how we approach this problem under extreme conditions with little validation data, as in North Korea.
2021-04-14 / 15:30 ~ 16:30
학과 세미나/콜로퀴엄 - 정수론: 인쇄
by 황원태(고등과학원)
Let $X$ be an abelian variety of dimension $g$ over a field $k$. In general, the group $\textrm{Aut}_k(X)$ of automorphisms of $X$ over $k$ is not finite. But if we fix a polarization $\mathcal{L}$ on $X$, then the group $\textrm{Aut}_k(X,\mathcal{L})$ of automorphisms of the polarized abelian variety $(X,\mathcal{L})$ over $k$ is known to be finite. Then it is natural to ask which finite groups can be realized as the full automorphism group of a polarized abelian variety over some field $k.$ In one of earlier works, a complete classification of such finite groups was given for the case when $k$ is a finite field, $g$ is an odd prime, and $X$ is simple. One interesting thing is that the maximal such a finite group was a cyclic group of order $4g+2$ only when $g$ is a Sophie Germain prime. Another notable thing is the fact that the abelian variety that was constructed to achieve the maximal cyclic group splits over $\overline{k}$, an algebraic closure of $k.$ \\ In this talk, we provide a construction of an absolutely simple abelian variety of dimension $g$ ($g$ being a Sophie Germain prime) over a finite field $k$, which attains the maximal automorphism group. This can be regarded as the counterpart for the previous construction. Also, we briefly describe the asymptotic behavior of the characteristic of the base field $k$ for which we can give such a construction. Finally, if time permits, we take a closer look at the case of $g=5$ by introducing the Newton polygon of an abelian variety of dimension $5.$ (If you want to join the seminar, please contact Bo-Hae Im to get the zoom link.)
2021-04-08 / 16:15 ~ 17:15
학과 세미나/콜로퀴엄 - 콜로퀴엄: Reduction of stochastic systems via resolvent equations 인쇄
by 서인석(서울대학교)
In this talk, we consider stochastic systems with several stable sets. Typical examples are low-temperature physical systems and stochastic optimization algorithms. The macroscopic description of such systems is usually carried out via a so-called model reduction. We explain a necessary and sufficient condition for model reduction in terms of solutions of certain form of partial differential equations.
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